What I've built & contributed to
A collection of my open-source contributions, personal projects, and work across the Galaxy bioinformatics ecosystem and beyond.
10
Projects
5
Featured
7
Categories
397
GitHub PRs
Featured Work
Automated bot system for managing and reviewing ERGA Assembly Reports with complete workflow automation including PDF-to-YAML conversion, reviewer assignment, duplicate detection, and Slack notifications.
Metadata commons and tooling for research software discovery and documentation. Contributions include complete GitHub Actions and backend updates, Galaxy tools bulk import system, and JSON formatting improvements.
Community-driven social media automation for the Galaxy Project ecosystem. Automated post generation from PRs for Galaxy community engagement, including preview features, error handling, and JSON feed bot.
Contributions to the core Galaxy platform, galaxy-hub, galaxy-visualizations, tools-iuc, planemo, and docker-galaxy. Work includes CI workflow implementation, bug fixes, tool updates, and documentation deployment.
AI/ML tool integrations including ChatGPT, WhisperX, FLUX, and LLM Hub with monitoring and TPV workflows. Tool installations, retry logic, lock file management, and GitHub Actions for resource conflict detection.
Other Contributions
Added a server.json configuration file and updated project documentation to prepare the repository for integration with the MCP Registry, enabling streamlined publication and broader accessibility within the Model Context Protocol ecosystem.
Enhanced XML feeds, external links, and GitHub Actions updates for the Galaxy Training Materials and Galaxy Ecology Tools CI/CD workflows.
Added minimize and unminimize functions for the IssueComment class in PyGithub, extending the library's GitHub API coverage.
Added futures trading support for major exchanges in 2021: CoinEx Perpetual endpoints and KuCoin Futures with all futures URLs and fetchTickers function.
A collection of Python automation projects including a Telegram bot for sale notifications, a web crawler for LunarCrush data, face detection with OpenCV, and stock market data analysis tools.