Projects & Open-Source Contributions
Bioinformatics & Scientific Computing
EAR Bot System (ERGA Assembly Reports)
Automated bot system for managing and reviewing ERGA Assembly Reports with complete workflow automation including PDF-to-YAML conversion, reviewer assignment, duplicate detection, and Slack notifications.
- Repository: ERGA-consortium/EARs
- Tech Stack: Python, GitHub Actions, CI/CD, PDF Processing
- Key Features: Automated PR reviews, PDF parsing, YAML generation, reminder system
- Major Contributions: View all PRs - Initial implementation and continuous improvements (2024-2025)
Research Software Ecosystem
Metadata commons and tooling for research software discovery and documentation.
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Repositories: RSEc-Atlas content utils - Tech Stack: Python, CI, Metadata Management
- Key Contributions:
Galaxy Social Automation
Community-driven social media automation for the Galaxy Project ecosystem.
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Repositories: galaxy-social galaxy-social-assistant - Tech Stack: Python, GitHub Actions, CI
- Purpose: Automated post generation from PRs for Galaxy community engagement
- Role: Creator and primary developer - preview features, error handling, workflow automation, and JSON feed bot
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Contributions: galaxy-social PRs galaxy-social-assistant PRs
Python Projects & Automation
Bots & Automation
- sale-telegram-bot - Telegram bot for sale notifications and automation
- lc - Web crawler for lunarcrush.com data collection
Machine Learning & Computer Vision
- face-detect-opencv - Face detection using OpenCV and Python
Data Analysis
- bourse - Stock market data analysis and visualization
Notable Open-Source Contributions
Other Open-Source Projects
- ERGA-consortium/EARs - The contributor refactored the PR activity checks and label management system within the EARBotReviewer module. They implemented a method to assess pull request activity and dynamically manage labels, enhancing the tracking and notification processes for stalled or inactive PRs. This improvement ensures more efficient and automated handling of pull request statuses. (PRs)
Galaxy Project Core
- galaxyproject/galaxy - Core Galaxy platform contributions (PRs)
- bgruening/galaxytools - Galaxy tool wrappers and utilities (PRs)
- galaxyproject/galaxy-hub - Event imports and GTN integration (PRs)
- galaxyproject/galaxy-visualizations - CI workflow implementation for testing (PRs)
- galaxyproject/tools-iuc - Tool updates (Tesseract 5.5.1) (PRs)
- galaxyproject/planemo - Bug fixes for URL error handling (PRs)
- bgruening/docker-galaxy - Documentation deployment and GitHub Actions (PRs)
- galaxyproject/galaxy-mcp - The contributor added a
server.jsonconfiguration file and updated project documentation to prepare the repository for integration with the MCP Registry. Their work ensures compatibility with the registry’s standards, enabling streamlined publication and broader accessibility within the Model Context Protocol ecosystem. (PRs)
Galaxy Training & Community
- Galaxy Training Materials - Enhanced XML feeds, external links, and GitHub Actions updates (PRs)
- Galaxy Ecology Tools - CI/CD workflow improvements (PRs)
UseGalaxy.eu Infrastructure
- Infrastructure Playbook - AI/ML tool integrations: ChatGPT, WhisperX, FLUX, LLM Hub with monitoring and TPV workflows (PRs)
- UseGalaxy.eu Tools - Tool installations, retry logic, and lock file management (PRs)
- VGCN Infrastructure - GitHub Actions for resource conflict detection (PRs)
- usegalaxy-eu/website - The contributor focused on maintaining and upgrading the technical infrastructure of the usegalaxy-eu/website repository. They updated Ruby dependencies, upgraded the Ruby version in the environment configuration to 3.4 for compatibility with newer features, and enhanced CI workflows by improving permissions, updating GitHub Actions, and resolving dependency-related errors. These contributions improve performance, security, and compatibility across the project’s development environment. (PRs)
Python Libraries
- PyGithub/PyGithub - Added minimize/unminimize functions for IssueComment class (PRs)
Cryptocurrency Trading (CCXT Library)
Added futures trading support for major exchanges in 2021: